miRNet

Data Statistics & Downloads

miRNAs
Xeno-miRNAs

Species	miRNA-gene	miRNA-molecule	miRNA-disease	miRNA-epigenetic regulator	miRNA-ncRNA	miRNA-TF	No. of miRNAs	No. of Genes	No. of molecules	No. of diseases	No. of epigenetic regulators	No. of ncRNAs	No. of TFs	No. of SNPs
Human	380639	3110	32004	1932	904583	2513	2741	16944	256	961	38	15987	321	2446632
Mouse	57921	1062	0	23	0	645	890	7506	59	0	4	0	129	0
Rat	610	581	0	0	0	47	198	249	43	0	4	0	23	0
Cattle*	48878	0	0	0	0	0	643	8160	0	0	0	0	0	0
Chicken*	82164	0	0	0	0	0	943	7762	0	0	0	0	0	0
Zebrafish	175	148	0	0	0	35	47	105	6	0	0	0	7	0
Fruitfly	283	0	0	0	0	0	46	97	0	0	0	0	0	0
C.elegans	3215	34	0	0	0	71	155	448	0	0	0	0	30	0
S.mansoni*	1274	0	0	0	0	0	134	1119	0	0	0	0	0	0
Pig*	531083	0	0	0	0	0	429	8353	0	0	0	0	0	0
Total	1106242	4935	32004	1955	904583	3311	6226	50743	365	961	42	15987	510	2446632

Note: All of the miRNA-gene interactions for S. mansoni, and most of the miRNA-gene interactions for Cattle, Chicken and Pig are predicted by miRanda.

Downloads:

miRNA-gene interactions: Human Mouse Rat Pig Zebrafish Fruitfly Cattle Chicken C.elegans S.mansoni

miRNA-small molecule interactions: Human Mouse Rat Zebrafish C.elegens

miRNA-TF interactions: Human Mouse Rat Zebrafish C.elegens

miRNA-epigenetic modifiers interaction: Human Mouse

Human specific annotations: Diseases lncRNAs circRNAs pseudogene sncRNA SNPs(miRNA) SNPs(miRNA-binding sites) SNPs(TF-bindling sites)

Hosts	No. of xeno-species	No. of miRNAs	No. of Genes	miRNA-gene interactions	No. of sources
Human	40	921	20,791	855,245	18
Mouse	27	501	19,430	610,224	18
Pig	14	136	12,537	155,144	4
Chicken	15	33	16,459	163,793	2
Fruitfly	6	60	12,445	75,829	6
C.elegans	6	51	16,391	59,010	8
Total	54	1,702	98,053	1,919,245	49

Downloads:

Detected xeno-miRNA target interaction data: Human Mouse Pig Chicken Fruit fly C.elegans
Predicted xeno-miRNA target interaction data: Human Mouse Pig Chicken Fruit fly C.elegans

Source Code

The miRNet web application is implemented based on the JavaServer Faces framework using the PrimeFaces library (primefaces.org). The back-end computing is based on R using the miRNetR package. The interactive visualization is based on the JavaScripts and leverages the sigma library for network visualization. We encourage users to use our public web servers for flexible and interactive data analysis tasks, and the R packages for batch processing. The source code is provided mainly for transparency. It is not intended to run as production server which requires advanced system admin expertise to set up and to maintain.

miRNetR: https://github.com/xia-lab/miRNetR
Web Framework: DropBox link